Live data from Hacker News

European leaders call for open access to all scientific papers by 2020 (2016)

sciencemag.org

61–70 of 105 posts

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#61
post #52

Earlier quoted context omitted.

There's more to running a journal than that - you have formatting editors who make the PDF look good and give it a thorough last read (finding for me several errors that peer review never found - missing or switched references, for example). The actual per-paper costs seem to be a few hundred dollars, as written in this article: http://www.nature.com/news/open-access-the-true-cost-of-scie... Profit margins are amazin…

> you have formatting editors who make the PDF look good and give it a thorough last read (finding for me several errors that peer review never found - missing or switched references, for example). This may depend on the field, but in CS I have never seen this. There is essentially no change made by the publisher to papers, and when they do make changes, more often than not it is to introduce errors. In any case, the…

In the biomedical fields, many articles have to be deposited on PubMed Central, which requires them to be reformatted in their archival JATS XML format. Since articles are typically written in Word in those fields, this process involves a lot of manual tagging of references and figures and such, only partially aided by scripts. The process must incur a fairly hefty cost in maintaining warehouses full of people to do the tagging.

In principle it's great that articles are uniformly in XML -- you could easily write reader software for tablets or phones, data-mine the text, extract references, whatever -- but I haven't seen much software taking advantage of it.

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#62

This probably comes up all the time in these discussions, but any change in this area has to be top down. i.e., People with influence and job security like tenured faculty need to signal a change and move to open access. A grad student or an assistant professor isn't going to put his/her career on the line for ideals. I'm not too familiar with the journal culture, but at least in CS with conferences, all the critical…

Honestly this sounds like it should come from Congress. You spend tax payers money on closed access journals you cheat the tax payers.

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#63

I don't understand how governments have the authority to make private companies (journal publishers) give-away their product for free. The fact that much of the research is funded by taxpayers is not relevant -- scientists have voluntarily submitted their work to private publishers for publication. Going forward, perhaps they should stop doing that. But for work that was previously published? It's rightly owned by th…

Spot on! A little too tame, if anything -- the unholy union between the government and education is tragic and worth bashing itself.

Sadly, there are many people who believe a centrally planned economy and nationalization are good ideas. Don't let the downvotes get to you.

I suppose each generation has to learn the hard way...

"If you are not a socialist at 20, you have no heart. If you are still a socialist at 30, you have no brain."

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#64
The UK is already (getting) there. UK Universities are assessed by the "Research Excellence Framework" (REF). In order for work output (i.e. papers) to be considered by REF, final peer reviewed papers must be deposited into an open access repository within 3 months of acceptance.

Source: http://openaccess.ox.ac.uk/next-ref/

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#65
post #52

Earlier quoted context omitted.

> you have formatting editors who make the PDF look good and give it a thorough last read (finding for me several errors that peer review never found - missing or switched references, for example). This may depend on the field, but in CS I have never seen this. There is essentially no change made by the publisher to papers, and when they do make changes, more often than not it is to introduce errors. In any case, the…

In the biomedical fields, many articles have to be deposited on PubMed Central, which requires them to be reformatted in their archival JATS XML format. Since articles are typically written in Word in those fields, this process involves a lot of manual tagging of references and figures and such, only partially aided by scripts. The process must incur a fairly hefty cost in maintaining warehouses full of people to do…

Typically there is a "script", not the code kind, that is followed for every dodgy Word document received, and following the script is outsourced. The production team is in charge of coordination with the outsourced team and final proofing of the XML and all the vagaries of pre publication that comes from 90s era processes and software and interactions with other ancient systems.

However! Once published and out the door, the shiny XML is available for scraping and transformation, and, if OA, there is no reason the XML can't be made public: https://github.com/elifesciences/elife-article-xml

An excellent bit of software that takes advantage of it is Lens: https://github.com/elifesciences/lens

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#66
post #2

Getting papers refereed and distributed does cost. I think many journals are now charging more than £1k for accepting papers for open access, conferences charge fees ~£.5k or more (+ travel). Of course you can submit to arXiv, but that's moderated - not refereed and is sponsored by wonderful people - but what if one day the people paying for it stop being so wonderful. In the past the cost of papers was paid on the d…

> I think many journals are now charging more than £1k for accepting papers for open access How about papers in the public domain?

Could you clarify?

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#67
post #58
post #20

Awesome. I do think all publicly funded research papers should be available. Research done by private companies using their own funds however shouldn't be. Maybe if America had open access, things would of turned out a lot better for Aaron Swartz :(

When I did my master's, I explicitly chose 2-clause BSD as the license for all the code I had produced as part of the thesis. My thesis project was done with, and paid for, by the university I attended. Since my work was being funded with public money, I felt it only fair to release everything with a liberal license. The review board expressly noted two things that were out of the norm with my thesis. One: I chose to…

Really well done. A decade later it's still a struggle to get some basic things negotiated and signed off when code is part of a submission, like an open license, a specific revision to be pinned to the paper if under version control, or simply getting the code into version control if not.

This requires training up and down the line and it's helpful if authors push for these basic things because if a formal process isn't in place to handle exotic content like code, then it may get dropped from the final submission because it's simply too much of an effort for everybody.

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#68
post #36

I don't understand how governments have the authority to make private companies (journal publishers) give-away their product for free. The fact that much of the research is funded by taxpayers is not relevant -- scientists have voluntarily submitted their work to private publishers for publication. Going forward, perhaps they should stop doing that. But for work that was previously published? It's rightly owned by th…

Isn't the whole issue rendered moot by SciHub?

SciHub is still technically illegal.

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#69

This probably comes up all the time in these discussions, but any change in this area has to be top down. i.e., People with influence and job security like tenured faculty need to signal a change and move to open access. A grad student or an assistant professor isn't going to put his/her career on the line for ideals. I'm not too familiar with the journal culture, but at least in CS with conferences, all the critical…

But if the high level accademics don't move to access on their own, government certainly has a large role in encouraging and incentivizing them to make the change, especially considering they provide a large amount of funding for academic institutions and research. Government action can certainly help us get there faster and more certainly than were we to wait for people to do it of their own accord.

Re: European leaders call for open access to all scientific papers by 2020 (2016)

#70
post #4

This is limited to public-funded research results, I think. https://www.theguardian.com/science/2016/may/28/eu-ministers...

Makes sense. If my tax money is going to a study, I should see all results and supplementary data.

Right now I'm researching a few studies that have been shown to be... "not 100% forthcoming"... thanks to some court documents, drafts, and collusive emails found in PACER. It has forever changed the way I'll look at any research, government-funded or not.

Post reply on HN