Because blobs of paper look to similar to blobs of potential explosives when xrayed. They arent scanning it so much as removing it from the scan of everything else.
Blobs of explosive normally have a chemical composition that is different from blobs of paper in a way that a X-ray scanner would detect. If somebody created an explosive that could pose as paper for X-ray, that would be noteworthy.
How is that? If a block of explosives is close to the same density as a stack of paper, they're both going to show up as similar colored blocks on the X-ray.