Earlier quoted context omitted.
Civil disobedience implies actions in the open and being willing to suffer the consequences of your actions. If Uber had made a public statement that they were instituting a policy to refuse service to city and law enforcement officials and were willing to take their lumps, you might have a point.
And uber does things in the open. They openly violate the law and reveal to citizens how much corrupt politicians are hurting them by taking away their transportation choices. This works only if it happens on a massive scale. If Uber didn't use this program, it's likely that their civil disobedience would end before it's large enough to get their message out.
The idea that Uber is some civil liberties campaign for improved transportation options rather than a corporation with an unusually aggressive disregard for anyone that gets in their way is rather exploded by the most cursory examination of their actions.