Several years ago I worked on a security product that used git as a sort of tripwire-type database. Since SHA1 was considered inadequate for Real Security, we had to hack jgit to use SHA256. It took a stupid amount of work - the 160-bit hash size was scattered all over the codebase in countless magic numbers. But it worked. The product was cancelled. I always wondered if the patch would be of any use to anyone.
You think? I dunno why you wouldn't try to submit a pull request though.