Earlier quoted context omitted.
Flexible environments are significantly worse if your application works on the original style of app engine.
Just wondering, why do you think so? (It wasn't obvious to me why, given a first read of the docs; the fact that applications run in VMs in Flex seems more like an implementation detail. Am I missing something?)
The standard runtimes are superior in a lot of ways, two big wins being lightning fast deployments (seconds vs. many minutes) and batteries included for all the app engine services. Logging in the flexible environment can also be a bit lacking. When you have something running in standard runtimes you basically don't have to think about many of the things that can normally go wrong on a server.
That said, many things about the flexible environment are rapidly improving, they've certainly come a long way since we first started playing with them around 6 months ago.