You're confusing 'biological reality' with naturalism. I am not advocating naturalism, nor am I claiming that one or the other is moral. I am claiming that amorality is reality, and our 'morality' is whatever the fashionable social norms of the day consist of.
For example:
> We're keeping the "weak" a live, prolonging life, disturbing the natural order of things. In our society, we consider it pretty immoral to leave someone to die of a curable disease, and we work to cure more. Clearly we're more interested in keeping those around alive and happy than having them die so the next generation will become "stronger". That's very contrary to evolution's preference for everyone just being disposable fodder to make better and better organisms.
Keeping their own alive, even the weaker members, is something many social animals do. The 'naturalism' position might be that we should engage in some kind of eugenics. The biological reality is that evolution doesn't care how strong individual members of the herd are. There's nothing "anti-evolution" about protecting the weak.
> Rights of the disenfranchised has nothing to do with it? It's related the same way diseases are - the disenfranchised should be mistreated and thrown out according to evolution. We seem to continually decide otherwise.
This is, again, nothing to do with 'biological reality' but with the straw-man of naturalism. And it couldn't be any other way. Everything we do is 'according to evolution', ergo the disenfranchised being accorded rights is 'according to evolution,' not somehow contra to it. We are animals, not gods.
> Surely there's a difference between someone undergoing a painful medical treatment that they believe will help them in the long run vs someone being tortured for another's enjoyment?
Maybe, but we have moved the goalposts from 'suffering is evil' to 'suffering for another's enjoyment is evil.' And yet there are people who allow themselves to be subjected to physical pain gladly for the enjoyment of others, and in older times, even tortured and killed.