The idea that a baseball team could ever go undefeated for even half a season is ridiculous. No amount of data analysis can make you do that. That would be like saying that a perfect poker player could win every hand. Even if your opponent was playing with their cards face up, sometimes he is gonna hit his inside straight on the river.
I don't follow baseball. Are you saying that a large part of baseball is luck, and you are bound to lose regardless of how skilled your team is?
- sequencing (3 walks, 3 strikeouts, and a home run in an inning can end with 1 or 4 runs depending on sequencing)
- ball-in-play luck (batters have little-to-no control over whether their line drive finds a glove for an out or a gap for a double)
- pitcher/hitter matchups favoring one team or another
- other luck over a single game (2+ errors in a game, 3+ home runs in a game, etc) that are well above the average for any team, but any team will have many of these games over the course of a season
- umpire strike zone favoring one team's pitchers
- umpire calls consistency
- park/weather favoring one team's players
If you need any explanation on any of these I'd be happy to provide it. I'll add more if I think of them, but this should give you a pretty good idea of why the best teams in baseball usually end up with a less than 60% win record.