Earlier quoted context omitted.
All that first sentence points out is that Rachel was more familiar with Linux than OS X, and mistakenly thought that strace would be on the system, and then reverted to using dtruss. She's just showing her process for trying to troubleshoot Unix processes to see what is going on under the hood, in a conversational tone. As for the "If you rely on machines like this, I am truly sorry" - I don't really blame her. She…
The sentiment against OS X might not show that strong, but it is clearly there. She doesn't even mention that what protects /usr/bin is System Integrity Protection, or that it can be disabled. The very idea that people might not be using system git is not even mentioned. All in all, it really feels as if it was written from the perspective of someone that does not usually work with OS X and does not know the system w…
The repositories can be similar to OS X in terms of providing really outdated versions of many packages. The same day Ubuntu releases a new version of the OS, packages can already be over a year out of date from the releases made by the software's developer.
The distros won't update the official repositories with newer versions of software once the version is pinned during the testing phase of the OS, due to the extensive amount of quality assurance that goes into ensuring system-wide stability. Their reasons are justified, but the end result still means you're typically not running the best and latest of anything.
Things are a little more difficult to understand with versioning in Linux. You may have git 2.5.0, but if you're on a release of the distro for which support is still ongoing, those CVEs are probably fixed due to backported security patches that don't bump the software's version number. In this manner, official repositories on Linux distros usually give you outdated software in terms of new features, but keep you entirely up to date in terms of security.
Information for Ubuntu in particular: https://wiki.ubuntu.com/StableReleaseUpdates
And then... TIL about the backports repository: https://help.ubuntu.com/community/UbuntuBackports