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ICYMI, iGEM organization's overall goal and the projects that are carried out as part of the annual competitions are highly related to this topic: http://igem.org/Main_Page In gene…

There are many suggestions here, but make sure to check Cancer Commons community out as they are trying to help patients and their close relatives for exactly this type of queries:…

I know, right? I was really happy when I learned that this branch of the CS is also referred to as evolutionary, because I was inspired by the evFold approach, which is related to …

cool! Thanks for sharing the link to your project. I am not really a Ruby expert, so wasn't able to figure out how you calculate the couplings. I will be more than happy to compare…

The PDFs that come out of igraph layout are not that pretty. The screenshots I used on the blog post are generated with Cytoscape 3.1.1, which gives better layout and better stylin…

let me know if you find points that can be improved; I would be more than glad to pull your changes in to the main repository. Thanks for trying this out.

that is partially true: single file apps will never have couplings in this manner. One extension to this project would be to find couplings between particular regions of the file a…

right now, it is not really tied to GitHub; but only expects you to give a git repository URL. Coupling it GitHub will allow more information on the system, for example knowledge o…

Thanks for the pointer; didn't know about that plug-in. As a long term Intellij Idea user, implementing this as a plug-in to Intellij is one of the things I would like to do in the…

agreed; those kind of linkages are not necessarily due to bad design but are, on the contrary, intrinsic to the design of the language you code in. Ideally I should consider these …