Alphafold

#1

Post by matejmecka » Thu, Jul 15, 2021, 6:22 PM UTC

Alphafold
github.com

Re: Alphafold

#2

Post by pjfin123 » Thu, Jul 15, 2021, 6:51 PM UTC

I'm assuming you can't run this on any consumer computer?

Re: Alphafold

#3

Post by pjfin123 » Thu, Jul 15, 2021, 6:53 PM UTC

pjfin123 wrote: post #2

I'm assuming you can't run this on any consumer computer?

Nevermind

> The simplest way to run AlphaFold is using the provided Docker script. This was tested on Google Cloud with a machine using the nvidia-gpu-cloud-image with 12 vCPUs, 85 GB of RAM, a 100 GB boot disk, the databases on an additional 3 TB disk, and an A100 GPU.

Re: Alphafold

#4

Post by sambroner » Thu, Jul 15, 2021, 6:58 PM UTC

pjfin123 wrote: post #3

pjfin123 wrote: post #2

I'm assuming you can't run this on any consumer computer?

Nevermind > The simplest way to run AlphaFold is using the provided Docker script. This was tested on Google Cloud with a machine using the nvidia-gpu-cloud-image with 12 vCPUs, 85 GB of RAM, a 100 GB boot disk, the databases on an additional 3 TB disk, and an A100 GPU.

That’s… way closer to consumer than I expected

Re: Alphafold

#5

Post by erhk » Thu, Jul 15, 2021, 6:59 PM UTC

pjfin123 wrote: post #2

I'm assuming you can't run this on any consumer computer?

2.2TB data

Re: Alphafold

#6

Post by lasagnaphil » Thu, Jul 15, 2021, 7:02 PM UTC

erhk wrote: post #5

pjfin123 wrote: post #2

I'm assuming you can't run this on any consumer computer?

2.2TB data

Nah, 4TB disk drives are not that expensive.

Re: Alphafold

#7

Post by lifthrasiir » Thu, Jul 15, 2021, 7:02 PM UTC

sambroner wrote: post #4

pjfin123 wrote: post #3

Earlier quoted context omitted.

Nevermind > The simplest way to run AlphaFold is using the provided Docker script. This was tested on Google Cloud with a machine using the nvidia-gpu-cloud-image with 12 vCPUs, 85 GB of RAM, a 100 GB boot disk, the databases on an additional 3 TB disk, and an A100 GPU.

That’s… way closer to consumer than I expected

Except for (DGX) A100.

Re: Alphafold

#8

Post by crazysim » Thu, Jul 15, 2021, 7:02 PM UTC

erhk wrote: post #5

pjfin123 wrote: post #2

I'm assuming you can't run this on any consumer computer?

2.2TB data

Amazing. That's not a lot of libraries of congresses at all.

Re: Alphafold

#9

Post by dekhn » Thu, Jul 15, 2021, 7:04 PM UTC

erhk wrote: post #5

pjfin123 wrote: post #2

I'm assuming you can't run this on any consumer computer?

2.2TB data

which is basically nothing. They could put it in a cloud bucket and you could copy it to another bucket in minutes.

Re: Alphafold

#10

Post by swalsh » Thu, Jul 15, 2021, 7:04 PM UTC

edit I was wrong. Please ignore.