Maybe I'm lucky but I have yet to work in a place where any of the organizational or project management problems could be blamed on JIRA. Not even as like a top 5 reason. I don't love many of the tools I use day-to-day but JIRA is the only one that I consistently hear and read so much vitriol about. I think there's something else people are so angry about and JIRA is getting an outsized share of the attention.
So, when I try to do something new (to me), and I search the web, the hits are frequently outdated or related to a plug-in that I might not have access to. Makes it really difficult to do anything that isn't part of my company's baseline.