I appreciate your quest for accuracy, but I think you are misinterpreting the material you quoted: "After one lap of the world championships, UCI took Femke’s bike in the pit area and tested it with some sort of tablet,” said Sporza journalist Maarten Vangramberen."
I think it means "they took Femke's bike [that was] in the pit area", and not "they took Femke's bike in[to] the pit area". As your first quote says, this was done during the race. Unless they stopped the race to do the check, they couldn't be referring to the bike she was riding at the time. And since this was during the first lap, she had not yet ridden the bike that was in the pit.
Here's the original quote in Dutch: "Na één ronde op het WK heeft de UCI de fiets van Femke in de materiaalpost gecontroleerd met een soort van tablet. De fiets werd meteen verzegeld en werd meegenomen." I don't speak Dutch, but I think "de UCI de fiets van Femke in de materiaalpost gecontroleerd" doesn't say they took the bike to the pit, rather that her bike "in de materiaalpost" was "gecontroleerd".
http://sporza.be/cm/sporza/wielrennen/veldrijden/1.2559848