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What happened to the lab-leak hypothesis?

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Re: What happened to the lab-leak hypothesis?

#781

Earlier quoted context omitted.

Are you not familiar with the 1977 flu pandemic? About 700k people died. You can argue about whether that was a "lab leak" or (as Gronvall prefers) a mere "vaccine accident", but either is unnatural. https://en.wikipedia.org/wiki/1977_Russian_flu

Even in the 'steelman' case of a lab leak in the '77 H1N1 - it was a natural virus that later escaped and caused the pandemic. Even if it was some accident involving the 1950's H1N1, that means the natural 1950s H1N1 was capable of causing a pandemic... We really need to come to terms with the fact that whether we research them or not, there are going to be increasing numbers of pandemic-capable viruses spreading in…

If I tested positive for SARS-CoV-2 and then visited a nursing home without a mask, exhaling the natural virus all over the home's vulnerable residents, then I'm pretty sure you'd say I'd done something terrible. I think you'd be right. It's obvious to most people in most circumstances that even if a pathogen exists in nature and naturally causes some degree of death and sickness, a human who enables that pathogen to cause a greater degree of death and sickness is doing something bad. This is especially true if they're doing so maliciously (e.g., in biological warfare), but still true even if they're merely reckless (e.g. my nursing home visitor, or that flu shot nurse who reused the syringes).

So why does this intuition fail when the virus passes through a lab? The 1946-1957 flu virus was indeed natural, but the 1977 pandemic of that same virus was near-certainly not--without the activities of the scientists involved, the virus would probably have stayed safely in the freezer forever. The scientists also had the option not to put it in the freezer in the first place, in which case it would have probably just gone extinct. That scientific activity almost certainly caused those deaths.

Maybe it's just that one death is a tragedy, and 700k deaths are a statistic? When the last smallpox death (so far, at least) occurred following a lab accident in the UK, the director of the lab in question killed himself out of guilt, even though that lab was basically in compliance with the standards of the time. Perhaps he just had an unusually sensitive conscience; but I wonder if the scale of death in the 1977 flu pandemic (or this pandemic now, if it turns out to be unnatural) is simply so great that people can't engage with it, and their usual moral mechanisms just shut down.

In engineering school, we're taught from the first week that our work has the potential to kill people, and that it's our fault if it does. If a structural engineer responded to a building collapse simply by explaining that buildings are very important for society and that many people would die of exposure without them, then his colleagues would be mystified, and perhaps concerned for his mental health. We're expected to study and learn from our failures, in order not to repeat them. The argument that "X has benefits, therefore we can ignore its costs completely" is so ridiculous that I've never heard it spoken.

Yet a vocal subset of virologists are somehow able to make just that argument for their discipline, shrugging off the deaths they cause as a "natural" cost of doing business, unworthy of study or thought--and a significant fraction of the public accepts it! I find this strange, and terrifying. Don't you?

Re: What happened to the lab-leak hypothesis?

#782

Earlier quoted context omitted.

There's also very scant evidence that the WIV was doing anything along the lines of GoF. They worked a ton with Baric's group in NC and other "western" scientists who did all of the genetic engineering that I'm aware of. The purpose of this engineering is to develop vaccines and treatments for the most likely natural viruses before they exist in nature and have a chance to infect humans. Even if they were doing more…

GoF on pathogens that couldn't possibly cause a human pandemic (including viruses that don't infect humans, or anything replication-incompetent) seems much less risky to me, and I believe that was excluded from the 2014 restrictions. It may still present some risk, to the extent it would guide later practitioners working in replication-competent human pathogens, with or without malicious intent. I generally dislike t…

Gao's work on the location of samples was greatly helpful - his other work...eh... in that paper you linked, he actually references papers speculating that Covid was in Brazil in 2019 and to a paper that takes seriously the idea that Covid was in Barcelona in March 2019 (https://www.medrxiv.org/content/10.1101/2020.06.13.20129627v...). I don't think he's a lab leak conspiracist but I do think he's got as much of a motive to shift blame elsewhere -- namely outside of China -- as anyone in the world, and acknowledging that the animal trade caused yet another pandemic would be politically damaging.

WIV was established before the concept of of bat coronaviruses could exist - so technically they are in Wuhan because some cutting edge communist insect research was there -- but in the support for the lab post-SARS, they were repeatedly promoted (mainly by the Chinese government so take with a grain of salt) due to their expertise, familiarity and proximity to bat populations. Hubei is consistently listed in the lists of areas with needs for increased viral surveillance alongside Yunnan and Guangong -- the earliest post-SARS work all shows this. As recently as 2019, scientists from the WIV were researching Hubei bat populations... people are acting like it would be completely impossible for betacoronaviruses to show up in Wuhan but it's a misconception that dishonest people are happy to promote. There are tons of coronaviruses in China, and tons of them in Hubei/Henan/Shaanxi area, it's clearly more likely that a new strain comes out of the Laos/Yunnan area since that's where SARS1 came from and they seem better adapted to human crossover, but with migration patterns and the history of virus collection there, it's not that unlikely for a Hubei-centered virus to exist and it only takes a single strain to cause a pandemic.

The fire analogy is a good one -- of course it's your fault if your campsite causes a wildfire -- but now we're talking about the nuts and bolts of forest management to prevent any fire from turning into a wildfire. Loosely, much GoF work is akin to controlled burns, or maybe closer to studying fire dynamics by burning overgrown areas. Potentially dangerous but likely useful when "the real thing" happens.

In any case, this thread is a bit stale, but I'm sure it'll just be a few weeks before some new conspiracy theory has started and all of the same tired tropes get to be knocked down again.

Re: What happened to the lab-leak hypothesis?

#783

Earlier quoted context omitted.

GoF on pathogens that couldn't possibly cause a human pandemic (including viruses that don't infect humans, or anything replication-incompetent) seems much less risky to me, and I believe that was excluded from the 2014 restrictions. It may still present some risk, to the extent it would guide later practitioners working in replication-competent human pathogens, with or without malicious intent. I generally dislike t…

Gao's work on the location of samples was greatly helpful - his other work...eh... in that paper you linked, he actually references papers speculating that Covid was in Brazil in 2019 and to a paper that takes seriously the idea that Covid was in Barcelona in March 2019 ( https://www.medrxiv.org/content/10.1101/2020.06.13.20129627v... ). I don't think he's a lab leak conspiracist but I do think he's got as much of a…

> I don't think he's a lab leak conspiracist but I do think he's got as much of a motive to shift blame elsewhere -- namely outside of China -- as anyone in the world, [...]

George Gao is clearly beholden to the CCP's official story that SARS-CoV-2 originated outside China. I don't see why that would require him to disregard strong genomic evidence for two introductions into the market, though--he could simply propose two packages of frozen fish, or two of whatever other story they're claiming now.

In my own limited judgment, I don't see what in the genomic evidence excludes evolution of the two lineages in humans--it seems entirely possible to me that sampling of human cases simply wasn't thorough enough to pick up all intermediates (if they even exist). None of your responses address that question of sampling coverage. I also see many highly-credentialed experts who consider evolution in humans to be possible. This makes me believe that you, Worobey, and quite a lot of media headlines are greatly over-representing the significance of two lineages separated by two SNPs.

> As recently as 2019, scientists from the WIV were researching Hubei bat populations... people are acting like it would be completely impossible for betacoronaviruses to show up in Wuhan but it's a misconception that dishonest people are happy to promote.

Non-specialists often use sloppy language, but the important question is clearly one of probabilities, not of possibility vs. impossibility. The greatest diversity of SARS-like viruses lies in SW China and SE Asia, including BANAL-20-52 with its extremely close spike, closer than omicron is to the original Wuhan virus.

That SARS-CoV-2 spilled over in Wuhan certainly isn't dispositive evidence of unnatural origin, but it's not what anyone expected. It would be nice if you could make that clear when you correct people.

> Loosely, much GoF work is akin to controlled burns,

I used that analogy in another comment here--when a recent controlled burn in New Mexico got out of control and destroyed hundreds of homes, everyone involved realized they'd screwed up. They're forming committees to understand what went wrong, and to compensate the victims, and to change their practices so this doesn't happen again.

If a disastrous controlled burn somehow killed 700k people, then I'm not sure the practice would ever be re-attempted. And yet the 1977 flu pandemic did just that, and no one really noticed or cared. Don't you find that remarkable?

Re: What happened to the lab-leak hypothesis?

#784

Earlier quoted context omitted.

You were mistaken to say just "coronaviruses" instead of "the greatest diversity of sarbecoviruses", but your comment was otherwise in line with the pre-pandemic consensus--no one expected spillover in Wuhan. Dr. Zhengli Shi, whose research is at the heart of this controversy, wrote in an interview: > We have done bat virus surveillance in Hubei Province for many years, but have not found that bats in Wuhan or even t…

> We have done bat virus surveillance in Hubei Province for many years, but have not found that bats in Wuhan or even the wider Hubei Province carry any coronaviruses that are closely related to SARS-CoV-2. Doesn't that mean COVID19 occurring naturally in Hubei is highly unlikely ?

No one expected spillover of a SARS-like virus from bats anywhere in Hubei. That doesn't mean it didn't happen, since the scientific consensus is sometimes wrong; but no significant new evidence has yet emerged to make that more likely. The closest bat viruses in nature (BANAL-20) were discovered post-pandemic in Laos.

Most people who believe SARS-CoV-2 arose by natural zoonosis propose something similar to SARS-1's wildlife trafficking conduit. It's also possible that a human was infected elsewhere, and then traveled to Wuhan and seeded the pandemic--the spread of SARS-CoV-2 is highly stochastic until the case count gets big, so they wouldn't necessarily have seeded other clusters along the way. It's all pretty mysterious though, much more so than the emergence of the two previous coronavirus human pathogens (SARS-1 and MERS).

Re: What happened to the lab-leak hypothesis?

#785

Earlier quoted context omitted.

> We have done bat virus surveillance in Hubei Province for many years, but have not found that bats in Wuhan or even the wider Hubei Province carry any coronaviruses that are closely related to SARS-CoV-2. Doesn't that mean COVID19 occurring naturally in Hubei is highly unlikely ?

No one expected spillover of a SARS-like virus from bats anywhere in Hubei. That doesn't mean it didn't happen, since the scientific consensus is sometimes wrong; but no significant new evidence has yet emerged to make that more likely. The closest bat viruses in nature (BANAL-20) were discovered post-pandemic in Laos. Most people who believe SARS-CoV-2 arose by natural zoonosis propose something similar to SARS-1's…

What do you make of reporting that claims a virus almost identical to COVID19 was previously identified and studied at the Wuhan lab as early as 2012?

https://www.reuters.com/business/healthcare-pharmaceuticals/...

> Since the middle of last year, Li's postgraduate thesis has been circulated online as purported evidence that a coronavirus very similar to SARS-CoV-2 could have been infecting humans as early as 2012.

> Some also believe the paper provides circumstantial evidence for broader allegations that WIV had captured, studied and conducted "gain of function" experiments on viruses found in the mine, including RaTG13.

> First identified in 2016, RaTG13 shares 96.2% of its genome with SARS-CoV-2, according to a paper released by Shi and other researchers early in February 2020, just weeks after the first COVID-19 cases had been identified in Wuhan.

Re: What happened to the lab-leak hypothesis?

#786

Earlier quoted context omitted.

No one expected spillover of a SARS-like virus from bats anywhere in Hubei. That doesn't mean it didn't happen, since the scientific consensus is sometimes wrong; but no significant new evidence has yet emerged to make that more likely. The closest bat viruses in nature (BANAL-20) were discovered post-pandemic in Laos. Most people who believe SARS-CoV-2 arose by natural zoonosis propose something similar to SARS-1's…

What do you make of reporting that claims a virus almost identical to COVID19 was previously identified and studied at the Wuhan lab as early as 2012? https://www.reuters.com/business/healthcare-pharmaceuticals/... > Since the middle of last year, Li's postgraduate thesis has been circulated online as purported evidence that a coronavirus very similar to SARS-CoV-2 could have been infecting humans as early as 2012. >…

That's correct but out of date. RaTG13 used to be the closest known bat virus to SARS-CoV-2, but (a) it's far enough that there's no simple path to derive SARS-CoV-2 from it in the lab, and (b) it's not anymore, with the discovery of BANAL-20. The WIV was also sampling in Laos near where BANAL-20 were found, but hasn't published any closer genomes.

For the conspiracy-minded, I'd note that the WIV had published a subset of RaTG13's genome pre-pandemic, enough for others to identify the similarity. So they pretty much had to publish the rest of the genome post-pandemic, since it was obvious they had something interesting. The WIV used to have a public database of viral genomes, but it went offline around Sep 2019. They cite "hacking attempts" as the reason, but still haven't reinstated it in any form.

I'd personally guess that the Chinese government doesn't know whether SARS-CoV-2 arose naturally or unnaturally, and doesn't want to know--their preferred story (imported into China on frozen food) is near-certainly false, so no truth can benefit them. It's very hard to say though, all pretty mysterious. There are significant unexplored paths for investigation within reach of American subpoena though, e.g. in any cloud services used by the WIV for genomic data.

Re: What happened to the lab-leak hypothesis?

#787

Its pretty much alive. https://www.nytimes.com/2019/08/05/health/germs-fort-detrick... Considering the history of 'budget cuts to cut government spending' combined with 'innovation' causing many environmental and social disasters in the US, I see a lab leak from the US Army's lab in Maryland much more credible than anywhere else. Budgets get cut by 75% by Trump Admn. The Army labs 'get creative' in cutting costs and…

Ding! Had to really dig through the comments to find a mention of this...

Pre-pandemic blood samples were later tested and found positive in europe

Which makes the wuhan-zoonotic vs wuhan-leak a false dichotomy.

Re: What happened to the lab-leak hypothesis?

#788

Earlier quoted context omitted.

GoF on pathogens that couldn't possibly cause a human pandemic (including viruses that don't infect humans, or anything replication-incompetent) seems much less risky to me, and I believe that was excluded from the 2014 restrictions. It may still present some risk, to the extent it would guide later practitioners working in replication-competent human pathogens, with or without malicious intent. I generally dislike t…

Gao's work on the location of samples was greatly helpful - his other work...eh... in that paper you linked, he actually references papers speculating that Covid was in Brazil in 2019 and to a paper that takes seriously the idea that Covid was in Barcelona in March 2019 ( https://www.medrxiv.org/content/10.1101/2020.06.13.20129627v... ). I don't think he's a lab leak conspiracist but I do think he's got as much of a…

Man, it's really strange that you're spending days late-replying to anyone that voices any idea outside your narrow and unsubstantiated narrative of the pandemic.

I'm not going to continue to argue (here or to your replies to my comments) about the science at this point, but I'll say this. There is no question whatsoever that there has been a conspiracy within the Chinese government and institutions to prevent public exposure of the origin of SARS-CoV-2 (whatever that may be). They've destroyed data, halted investigations, literally blocked roads to prevent it from being discovered. So slinging mud around calling hypotheses that involve no additional conspiracy beyond the one we know to exist "conspiracy theories" is completely ridiculous and out of touch with reality. If you actually want to have constructive conversations, start by throwing that garbage out of your replies.

Re: What happened to the lab-leak hypothesis?

#789

Earlier quoted context omitted.

> ...because surely nobody would be stupid enough to make new SARS virus strains on purpose. They’re worthless as biological weapons, and the risks are insane. If we wait until the next pandemic hits, we will be months or years behind the curve, trying to understand it and develop treatments. Millions more people will die because we'll have been caught on our back foot. Lucky for the human race, viruses are statistic…

This kind of logic seems sane until you stop and think about it for a while. First off -- and this should be enough by itself -- the research the Wuhan lab did hasn't appeared to have helped in a material way to fight the COVID pandemic. So they gambled, lost, and there is nothing to show for it . But that's not the insane bit. The truly insane bit is that over 20 million people died for this little "experiment" of t…

> First off -- and this should be enough by itself -- the research the Wuhan lab did hasn't appeared to have helped in a material way to fight the COVID pandemic. So they gambled, lost, and there is nothing to show for it.

You can't possibly claim that without being a qualified expert in the field. I'm not, but I have asked friends who are--and they're quite firm that this type of experimental research (1) did help speed up our COVID-19 response, and save lives, and (2) is critical to prevent future outbreaks from becoming much, much worse.

I'm not asking for journal cites or anything, but I am curious: What's the source of your conclusion that gain-of-function research didn't help prevent the COVID-19 pandemic from becoming even worse?

Re: What happened to the lab-leak hypothesis?

#790
post #433

Earlier quoted context omitted.

The comment this is a reply to is what's known as rhetoric. The goal of rhetoric is to persuade the audience in the absence of logic or evidence. The comment is offering "testimony of conversion" which is not scientific.

Not really. The poster is saying they used to believe X but was persuaded subsequently that ~X was more likely. This seems to indicate at least a recent pattern of avoiding confirmation bias.

If you find "I changed my mind" to be the message, then you agree with me that it is rhetoric. It is testimony of conversion.
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