Earlier quoted context omitted.
Hm, seems documentation for for targeting Linux as a build target is missing? Or am I just looking in the wrong place?
Perhaps the docs don't highlight it enough, but I think you should find what you're looking for under http://www.robovm.com/docs#using-the-command-line-tool It's actually what you get when building on linux with no special args: the default behavior is to produce a binary for the current operating system and architecture. Thereafter, if you want to get fancier and target other specific systems, there are options for…
We used to have instructions for installing and compiling under Linux. Since our main focus is currently iOS and some users were confused by mentioning Linux and thought that they could cross-compile for iOS on Linux we removed those instructions from the web site. Only Linux x86 can be targeted when compiling under Linux. Here's what you need to install if you are running Ubuntu 12.04:
sudo apt-get install build-essential g++-multilib openjdk-7-jdk
Then you also need to download an ICU data file and place it in /usr/share/icu: sudo mkdir -p /usr/share/icu
sudo sh -c 'curl "http://download.robovm.org/icudt48l.dat" > /usr/share/icu/icudt48l.dat'
From then on you should be able to follow the command line usage instructions to compile Linux x86 executables.