Cryptocurrencies tend to use very large integers (128 or 256 bit) for everything throughout the system. Rounding doesn't happen until a number hits the UI. Why would you design a system that intentionally destroys data several times internally?
Do you still owe me a tenth-of-a-cent? Even if you do, does anyone (me, you, the taxing authorities) care? In fact, does anyone want to go through the effort of maintaining that debt? Even if I repeat this with 100,000 customers, I'm out $100. Again, does anyone care?