This is about to become a massive issue for Godaddy SSL users[1] seeing that Godaddy has still not added their G2 CA server (which signs all SHA-2 certs at Godaddy) to the default truststore for Java and some other devices/languages/platforms! [1] http://stackoverflow.com/questions/18746565/godaddy-ssl-cert...
I'll leave CA recommendations to those who deal with them more than I, but if you use Godaddy as a registrar I would urge you to switch to Gandi.net (or namecheap.com if you cannot afford Gandi).