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Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

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Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#41
post #38

Earlier quoted context omitted.

Your never going to have a completely random test. Your randomness comes from you picking for an area and the people who chose to do the test. Saying otherwise is being pedantic to your detriment.

It’s normal to randomly sample multiple locations. Random samples from even 10 random locations are much more useful.

Not really... more data can't fix sampling bias.

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#42
post #6

A third of a random sample taken in Chelsea, Massachusetts : https://en.wikipedia.org/wiki/Chelsea,_Massachusetts >Chelsea is [...] directly across the Mystic River from the city of Boston. [...] It is also the second most densely populated city in Massachusetts behind Somerville. A random sample in a highly affected and extremely dense area is not a model for the whole state.

And it’s a random sample of people on the street, at some particular place, which may not very representative of the population of Chelsea either.

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#44
post #21
post #10

>Nearly one third of 200 Chelsea residents who gave a drop of blood to researchers on the street this week tested positive for antibodies linked to COVID-19, a startling indication of how widespread infections have been in the densely populated city. >The doctors used a diagnostic device made by BioMedomics, of Morrisville, N.C., to analyze drops of blood. It resembled an over-the-counter pregnancy test and generated…

Because you quoted the article using BioMedomics' antibody diagnostic test, I will quote the accuracy from their site[0]: > In order to test the detection sensitivity and specificity of the COVID-19 IgG-IgM combined antibody test, blood samples were collected from COVID-19 patients from multiple hospitals and Chinese CDC laboratories. The tests were done separately at each site. A total of 525 cases were tested: 397…

So interestingly, those results from the research paper with more details ( https://www.biomedomics.com/?fldl=3050 and also https://onlinelibrary.wiley.com/doi/full/10.1002/jmv.25727 ) credit a different manufacturer called Jiangsu Medomics Medical Technologies. I wonder if that's their subsidiary, or if they're buying the tests from them.

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#45
post #7

Hmm, I wonder if they attempt to control for bias. It sounds as though they were asking random passersby if they wanted a COVID-19 antibody test. If so, it seems that the sample group could be biased toward including more people who suspected that they may have been infected (previously or currently) than a truly random sample.

Not like you can force people to test so it's impossible to get full randomness there.

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#46
post #28

Earlier quoted context omitted.

Specificity of 90% seems really low? Does that mean almost 1 in 10 would test positive even if nobody had it?

Yes, it's 10% false positive. But it's not "really low" in the sense that it's typical for antibody tests. Which is one reason not to do wide-spread testing.

Or you could flip that around and make testing so plentiful everyone is tested 3x (perhaps by independent labs), so the FP rate is more like...

1/10 * 1/10 * 1/10 (1/1000)

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#47
post #27

Can we change the title? Article title is "Nearly a third of 200 blood samples taken in Chelsea show exposure to coronavirus" The sample is clearly not random

Yep.. I saw a similar headline claiming LA infections are 55x the reported rate. I think the math is likely simpler, and the infection is somewhere between 3x-5x (10x tops). I've read a few reports saying about 50% of people are asymptomatic, 30% show symptoms that aren't bad enough for hospitalization and 20% require hospitalization. I can't find the source I got it from but I believe it was a Chinese study

If anyone has good data on the asymptomatic proportion, I'd appreciate a link. I keep seeing 50% (or sometimes 'up to 50%'), but to the extent that I've looked at actual sources, it seems that people are conflating presymptomatic positive tests with lastingly asymptomatic infections.

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#48
post #27

Can we change the title? Article title is "Nearly a third of 200 blood samples taken in Chelsea show exposure to coronavirus" The sample is clearly not random

Yep.. I saw a similar headline claiming LA infections are 55x the reported rate. I think the math is likely simpler, and the infection is somewhere between 3x-5x (10x tops). I've read a few reports saying about 50% of people are asymptomatic, 30% show symptoms that aren't bad enough for hospitalization and 20% require hospitalization. I can't find the source I got it from but I believe it was a Chinese study

Based on several studies using different methods, the death rate (infection fatality rate, or IFR) is likely around 0.5%

So if you go back the average time from infection to death (2-3 weeks) you can get a sense what the ratio was in your area back then.

[1]: https://mothership.sg/2020/03/iceland-covid-19/ (I did the work on the side, extrapolated to about 0.2%-0.5%)

[2]: https://www.land.nrw/sites/default/files/asset/document/zwis... (Germany study, 0.37%, decent sampling method)

[3]: https://www.ncbi.nlm.nih.gov/pubmed/32234121 (Diamond princess ship, 0.5%)

[4]: https://www.medrxiv.org/content/10.1101/2020.04.14.20062463v... (Santa Clara county study, 0.15% - 0.3% if you do the math). Methodological problems with the method of sampling that might increase the number of positives and the test specificity issues might increase false positives, but probably still in the ballpark

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#49

Earlier quoted context omitted.

Your never going to have a completely random test. Your randomness comes from you picking for an area and the people who chose to do the test. Saying otherwise is being pedantic to your detriment.

You can choose to offer people some incentive to take the test. If you offered $50 per person you would probably eliminate most sampling bias.

You're more likely to attract people of lower incomes, which we already suspect are more vulnerable to Covid given the kinds of jobs they have.

Re: Nearly a third of blood samples taken in Chelsea show exposure to coronavirus

#50
post #10

>Nearly one third of 200 Chelsea residents who gave a drop of blood to researchers on the street this week tested positive for antibodies linked to COVID-19, a startling indication of how widespread infections have been in the densely populated city. >The doctors used a diagnostic device made by BioMedomics, of Morrisville, N.C., to analyze drops of blood. It resembled an over-the-counter pregnancy test and generated…

This doesn't seem that random - it is sampling from people on the street. So it's going to miss people who aren't going out onto the street. And people who are going out are more likely to catch something than those who aren't.

The previous tests I'd seen (I hadn't read about the Los Angeles test results posted today yet) had been fairly extremely not random. For example the homeless shelter in Massachusetts and pregnant women in New York. That's why I used the phrase "remotely resembling random."
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