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Mendeley encrypts users' database after Zotero provides an importer

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Re: Mendeley encrypts users' database after Zotero provides an importer

#41

To anyone looking for an alternative, I'd just throw out there that I've been very happy with ReadCube. It's proprietary subscription software, but that's a trade-off I can live with for a great browser plugin, mobile apps with good annotation, cloud storage of annotated articles, seamless syncing across devices, and a high-quality Word citation plugin that works on the Mac. This company bought Papers, the Mac app, a…

I've been looking for a replacement for Papers for years; it just doesn't work well anymore with the lack of attention they've given it since the acquisition. For me subscription pricing is a no-go. It's sad, I would happily pay for a new standalone Papers...

Re: Mendeley encrypts users' database after Zotero provides an importer

#43
post #6

Zotero has improved a lot, while Mendeley has repeatedly regressed. Mendeley used to be quite a good program, but recently you can not export annotated PDFs meaningfully. For example, sending a folder of annotated PDFs to a co-author during a literature review is impossible. This is obviously the case since Elsevier does not want you to trade research papers, whether you have lawfull access or not. The updates that t…

Zotero has improved a lot, though sadly it still has a way to go on the user experience of Mendeley. My main gripes are - The way that it still doesn't play nice with cloud services (syncing the directory and its just a matter of time until you get database corruption. It takes a lot of wonky setting up to get it to kind of work, which just shouldn't be the case - The lack of developers and thus slow pace of improvem…

It is a good idea to get some Zotero cloud storage. The sync works perfectly for me. Since any serious library will be over the Mendeley free limit, I think it's a fair comparision.

Of course Zoteros development is less funded and less agile. Given that, I think they have worked on many shortcomings. The interface is now good, the group-based sharing works, PDFs are read and meta-data is added well. The import plugin is better than that of Mendeley.

Mendeley has an advantage in that it has a great PDF viewer and editor. But since you can not do anything with these PDFs and annotations, like export them or send them anywhere, it's now pretty much useless.

Switching is not easy, but in the long run I don't think you'd be faced with much issues going from Mendeley to Zotero. It was certainly worth it for me.

As it stands, you can still import from Mendeley to Zotero, so I'd at least do that now, until Elsevier finds a way to shut this down completely.

Re: Mendeley encrypts users' database after Zotero provides an importer

#45
post #15

If I'm understanding things correctly from the reading (which, let's be honest, that's an assumption on its own), the tl;dr seems to be that Mendeley heard about an open source product working on a set of importers that would, potentially, result in Mendeley customers migrating to this free alternative[0]. To provide cover for this change, they invoked user security. And hey, user security is a pretty good reason to…

It's not so much the lock-in issue, or the migration issue for me. I can pay for a good service, Mendeley used to be that, cause this is my job.

The issue is that due to Elsevier, a DRM logic was implemented that just doesn't make sense for scientists. The idea is that I can tell you about a paper, but you have to download it yourself because I can not send it to you. I can annotate the PDF, but I can not send you the annotated PDF. We have to look at the same screen to see what I wrote.

That end result means that Mendeley is no longer a good product. It makes scientific collaboration difficult to impossible. Sharing of files, ideas, results and writing is such a basic thing in todays world, that you should really be surprised how a company would think that this is a good idea, especially for scientists who almost always collaborate in loose teams.

But that is was happened, because Elsevier only makes money if the only place you can get any PDFs is their DRM walled garden.

So Mendeley is now bad. And NOW it matters that you can not get your data out of it. And the thing is, these annotations and folder categories, tags and meta-data - that's all specific to one researcher. It can not be replicated. It could be years of work in that database, and Mendeley holds it hostage.

Re: Mendeley encrypts users' database after Zotero provides an importer

#46
post #19

For anyone who is interested in the different options for reference management, I've been sporadically maintaining a webpage about the various options since 2015: https://maxmasnick.com/projects/reference-managers/ I re-un-recommended Mendeley back in June 2018 when this news first broke. (I was initially too sketched out by Elsevier to recommend Mendeley, and this just confirms these suspicions.) tl;dr Zotero is a p…

Which one gives the best seamless mobile integration experience? Papers for iOS wasn't bad (if you let it finish syncing with Dropbox ) but curious about this!

Probably Papers is your best bet at this point.

Zotero will let you send PDFs to/from a tablet with the ZotFile (http://zotfile.com) plugin. This works well if your workflow is (1) find PDF on your computer; (2) read on tablet. But if you want to do anything else -- even choosing a PDF to read from your tablet without touching your computer -- then Zotero won't work. With that said, I know Zotero is working on mobile apps...not sure how far they have come though.

If you're Mac/iOS only, also check out https://www.sonnysoftware.com/bookends/bookends.html.

Re: Mendeley encrypts users' database after Zotero provides an importer

#47
post #39
post #19

For anyone who is interested in the different options for reference management, I've been sporadically maintaining a webpage about the various options since 2015: https://maxmasnick.com/projects/reference-managers/ I re-un-recommended Mendeley back in June 2018 when this news first broke. (I was initially too sketched out by Elsevier to recommend Mendeley, and this just confirms these suspicions.) tl;dr Zotero is a p…

Very informative post, thanks. I’d love to hear your impression of Citationsy (closer to CiteThisForMe or RefMe in functionality than Zotero it EndNote).

Never heard of it before!

Looking at their website, it does seem like Citationsy is somewhere in-between a full-blown reference management application and one-off bibliography creation applications.

What Citationsy does not appear to do is manage inline citations within a Word or Google Docs document. Zotero will let you hit a keyboard shortcut, search for a reference, and insert a citation right in a paragraph (e.g. "(Smith, 2001)") . It then takes care of also adding that citation to the bibliography at the bottom of the document, and keeping the numbering in sync (if your citation style uses numbering).

I would only use a reference manager that has a word processor plugin for inline citation management -- and it doesn't look like Citationsy does.

To quickly build a bibliography, or just get a properly formatted citation for a single paper, I like https://zbib.org (also from Zotero).

Edit: clever, clever, parent poster is the creator of Citationsy. Hello! For more backstory on Citationsy see https://blog.prototypr.io/on-citationsy-4e143bbafc04. Sounds like Cenk has good taste (mentions iA Writer as inspiration). I'll be exploring Citationsy more.

Re: Mendeley encrypts users' database after Zotero provides an importer

#48

Mendeley also snitches evidence of your SciHub habit to Elsevier. It probably won't amount to anything, but do you really want to bet against Elsevier becoming exceptionally greedy, desperate, or both?

Please provide some citations for that claim.

Re: Mendeley encrypts users' database after Zotero provides an importer

#50
post #28

For Zotero users: Try the add on zotfile (zotfile.com). It allows you to extract PDF annotations and save them as notes in Zotero (among other things). Full disclosure: I am the developer.

zotfile is a must-have for Zotero! Thank you for making it.
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