Well, as the article points out, the things being imaged are most definitely actual atoms. The only thing TFA is nitpicking about is that light isn't used to image those atoms. This is about as interesting as pointing out the fact that an ultrasound picture of a baby isn't an "actual picture", since we use sound instead of light to make the image.
No I disagree. An ultrasound picture of a baby accurately reflects the actual form of the baby. A Scanning Tunneling Electron Microscope does not accurately reflect the form of an atom because it simply uses an artificial dot to represent the presence or absence of an atom. In short, the "map" that STM's give us is abstracted from reality and does not accurately portray an atom (in large part because STM's still simp…
[1] https://physics.aps.org/featured-article-pdf/10.1103/PhysRev... (open access)