Maybe it is just a reflection on the state of filesystems vs databases. There is no fundamental difference between a database and a flat file, it is all bytes on a disk/memory in the end. So it is mostly a question of balancing the roles of the hardware, OS, and application software. For example, if the reason you are using a database is that it does a particularly good job at limiting disk IO, then it may not be nec…
You can tar up your flat files as well, but that is a separate process and can be time consuming for larger directories.
Perhaps there is a use case for a file system backed by portable database like sqlite, such that you can just mount the volume and send it around without pain, but can prefer to use normal command line utils (ls, rm, grep, etc) instead of interacting via SQL.