Earlier quoted context omitted.
Doesn't that imply our theories are "good enough" for all practical purposes? If they're impossible to empirically disprove?
Typically whenever you look closely at an object with complex behavior, there is a system inside made of smaller, simpler objects interacting to produce the complexity. You'd expect that at the bottom, the smallest objects would be extremely simple and would follow some single physical law. But the smallest objects we know of still have pretty complex behavior! So there's probably another layer underneath that we don…
That presupposes that there's a bottom, and that each subsequent layer gets simpler. Neither proposition is guaranteed, indeed the latter seems incorrect since quantum chromodynamics governing the internal structure of the proton is much more complex than the interactions governing its external behavior.