GNU/Linux, and Free software and hardware in general, look to be the BIG winners out of the NSA brouhaha, because all non-US governments, businesses, organizations, and individuals around the planet who need to safeguard their private or confidential information now have reason to mistrust proprietary (unauditable) software and hardware. Free, open software and hardware are less likely to have secret 'back doors' ins…
It would be grossly unprofessional of the three-letter agencies if they should have failed to run counter-intelligence operations upon the open source communities. Futhermore, given their resources to hire hackers and long history of infiltrating loosely affiliated organizations, it is hard to image that they have struggled to place moles deep within many critical projects. Open source communities have no membership…
However, the fact that Linux source is available for review does make it more secure on a relative basis. Sure, it is naive to think a zero day couldn't be buried in there, but at least there is the opportunity for review. With a closed-source OS, we don't even have the luxury of a false sense of security.
Not to get all tin foily, but I'd be more concerned about hardware exploits if you're thinking in terms of "man on the moon" resources... where are all those chips made again?