Interesting, I have access to a university cluster (in the top 100 of the top500) and I had played with the idea of using it in a similar way. I didn't actually implement it because I need to maintain good terms with the IT dept for my research (and everything else really). Does anyone know how this would scale or at what point (in terms of number of cores/memory) it would be a worthwhile?
I don't know the particulars, but CPU mining of scrypt coins is at least not very profitable.