tldr; for those who didn't bother to look for "an explanation" of why the wires were soldered directly to the pins of the IC instead of THE BREAK-OUT BOARD... > Now, you're probably thinking to yourself: "Why would you not just solder to the nice, big, widely spaced holes for the pin headers?", which is a fair question. I suppose this the one place I opted for a little less jank. You see, differential pairs actually…
If you wanted to be fancy, it would have been better to lift those two pins, or to cut the traces.
All this is completely unnecessary given the speeds involved (12Mbit/s) and possible skew or stub lengths, which they acknowledge.