Earlier quoted context omitted.
Yes, I truly hope that these proteins do work as intended, but a part of me thinks "what about obscure virus X, which is capable of easily infecting most cells in a body but doesn't exhibit any negative effects on health?" If such a virus existed then these proteins, administered in significant enough amounts, would kill a person infected with virus X.
Nah you would be given a dosage large enough just to kill the invading virus. It could hurt the person, but killing them is unlikely. Actually wrote a paper on a something similar I came up with back in undergrad using HIV.
But let's suppose that you can't measure in advance the number of cells that are infected, nor can the drug actually tell the difference between infected and not-infected cells (due to the aforementioned genetic abnormality.) What happens when the drug kills too many normal cells? The human dies.