Good luck holding a vacuum under the ocean. I read stuff like this and I think, "Gee, I don't think these people have actually built anything." because if they had they would realize that if it costs $1M a foot too build subways [1] in cities with moderately skilled labor, its going to cost $10 - 25M/ft to build something like this. That's half a quadrillion dollars (448 trillion dollars). What sort or rate of return…
In other words you're talking about sinking 3 meters of tube that would weigh 76 fewer pounds than if there were air. This is probably a small effect compared to the weight of the strong metal casing that would need to surround such a vacuum.
So since we can sink normal air-filled subways quite normally (e.g. the BART in San Francisco) this must be a well-established technology.