Earlier quoted context omitted.
"It also helps to think of a three-dimensional space bounded by the sides of a box, and to think of another 11 boxes stacked on top of each other." Of course the problem with that is that you're still thinking three-dimensionally because "on top of" is a description of a 2D or 3D relationship.
Yes, but by boxing each sub-space, you can think of the pile of boxes as a dimension separate from the Z axis. It's like painting a house in isometric style. You draw each floor above the one below it, and put a "perpendicular" slanted axis to represent the third dimension in 2D. You could put a 'slanted' fourth axis in a 3D origin of coordinates, but I find it easier to think of the lower corner of each box as the o…
Even with that the same problem occurs: "slanted" is a 3D relationship, so at best it's an analogy.
It's like "translating" the color red to some shade of gray to a person who can only see in black and white.
Or trying to describe through written words what music is like to someone who can't hear.
These are all analogies which might allow us to reason and get interesting/useful results when we use such analogies... but we should not under the illusion that we really know what those things for which we have no senses are like.
Also, there are probably all sorts of interesting/useful connections, relationships or conclusions that a being who really could sense 4D objects would find obvious or easy to make that we may never arrive at because our way of thinking of them is so limited in comparison.
That's not to mention trying to think about even higher dimensions or various other mathematical constructions that have no obvious translation to things in our ordinary experience we can relate to.