The polygraph is pseudoscience. Of course it can be beaten, it doesn't work to begin with. Why the US still puts so much weight on them when they know they don't work is a mystery to me. Just get rid of the damn things and do your homework better.
The trouble comes from the fact that in order for all of this to work, you need to say the polygraph works. If you admit it's fake, or even if your procedures imply it's fake, it loses its magic. And so you naturally develop procedures that put a lot of stock in the polygraph. People start to believe in it. You build up a culture that relies on the magic of the polygraph. And then things like this happen.