Earlier quoted context omitted.
Have you tried 10 kΩ for LED and FET pull down? 100 Ω sounds like way too much current for modern LEDs. I often end up using 100 kΩ especially for green LEDs. They are very visible under indoor lighting even with 1 MΩ and 3.3 V supply. For pulling down FETs, you want something in the range of 10 kΩ. 10 MΩ sounds way too high, which makes your circuit sensitive to being touched or affected by moisture, especially if t…
Are you sure all those numbers are in the right ballpark? With a 3.3V supply and a 1 MΩ resistor, the most current you can get from that circuit is in the neighborhood of 3μA, and that's ignoring the LED voltage drop. I would think the LED won't be visible until you're around the mA range. Or are some LEDs visible in the low μA range?
In fact, just hold an LED between your fingers in a dark enough room and you'll sometimes see them glow from stray magnetic fields inducing enough current in your body to light them.