Consider working on genomics
101–110 of 299 posts
Re: Consider working on genomics
#102Re: Consider working on genomics
#10320 years ago I got interested in "bioinformatics." I loved learning something about molecular biology, after all those years of hearing about DNA and not understanding it. And "Molecular Biology of the Cell" is, hands down, the greatest textbook ever written. That said: a lot of the comments are spot on. You're working in a field where the hard scientists and business people rule and you're a helper. Maybe they're gr…
Re: Consider working on genomics
#104I recently switched from software engineering on ads and web performance at a FAANG to (meta)genomics at a nonprofit startup; happy to answer questions
Re: Consider working on genomics
#105Re: Consider working on genomics
#106Several of the job boards linked don't have any job listings, most don't provide a salary range, several require advanced degrees, and none specify whether remote work is possible. If I can get a better salary and working conditions at some crappy no-name startup, why would I choose to work at an organization that respects my craft so little they haven't bothered to maintain their software for a decade?
I think your phrase here sums up how many people feel: > why would I choose to work at an organization that respects my craft so little they haven't bothered to maintain their software for a decade This is changing in my experience, albeit slowly. And really, this is what I'm calling on us, as a community, to do better on. The reason you _would_ work at these organizations is because (1) the subject-matter is really…
It's ultimately down to the cultural norms of the field, as well as the realities of academic funding.
I was a research software engineer (RSE) for the best part of a decade. The best thing that happened to me was being made redundant when my funding ran out, and being forced to work in industry. What a difference (and wholly for the better).
The reasons you give are all nice positives, but they all ultimately are very emotionally manipulative. You're asking people to act against their own self-interest. But this isn't really for the benefit of humanity. It's for the benefit of the PIs who run the research groups, and keeping their little empires running. But the cost to the individual is great. You're sacrificing salary, a career track, advancing your own skills to the full, and in many cases the opportunity to have a life: being able to afford a home and support a family.
In retrospect I, and many others like me, do feel that we were taken advantage of to some degree.
I spent several years on a massive grant, then several years on lots of small short-term grants (12 months, 6 months, 3 months). You can't risk getting a mortgage when you have no guaranteed employment. And it's also very stressful not knowing if you'll be employed in three months time every three months. And unlike in a company, RSEs don't really have a proper career track. There's no real progression. You're a hired help.
RSEs are not treated equally with academics. Let's be really honest about that. We're not. I even had a PhD in the subject area and you're still beneath all of the "real" academics. We're not "partners" in their work. We're the dogsbody's.
If these people want software developers with real chops to work in the field then they need to pay a competitive salary, have a proper career track, and really fix the job stability. And they also need to properly respect the expertise RSEs bring. Unless all of those are fixed, a career in industry will continue to be the only rational choice.
This won't happen though. Tenured academics refuse to consider paying the going rate because that would mean the "hired help" would be earning considerably more than they do. I had already topped out the salary band when I left, and I was earning more than most of the junior-mid-career academics. They are, of course, on fairly poor salaries. They too would earn vastly more in industry, but are mostly unwilling to consider that option as a rule. Their loss. If they truly respected the value they were getting, then they would pay for it. It will not happen though. Most of academia is about climbing the greasy pole and not about advancing the state of the art; there's just no way they'll permit others to sit higher on the salary pyramid than they do.
At least in industry skill and competence and the ability to deliver are highly-valued, and companies will gladly pay for people who are proven to deliver. In practice the work I do in industry (biomedical) has far more positive impact upon the world than anything I did in the academic niche I used to occupy, and is also vastly more enjoyable, with a lot more responsibility and technical depth.
Are you personally planning to stick it out for the whole of your career? Because if I could give you the advice I would have liked to have given myself, it's that you should properly think about where you want your career to go in the medium to long term, and decide when (not if, but when) you will exit to move to industry. Use it as an opportunity to gain some useful skills, and move on to where your skills will be properly valued.
Re: Consider working on genomics
#107> Google Genomics. Careers link. > Microsoft Genomics. Careers link. Google and Microsoft probably know how to make software? Side note: why does this page have user-select: none on body? It's annoying; what does it accomplish?
Google Genomics is now aka Google Cloud Life Sciences. There's also their sister company Verily that operates in this space.
Re: Consider working on genomics
#108The author completely neglects the downsides: - The compensation absolutely do not match the workload and education required. - The sheer number of disreputable PIs and their unrealistic goals for software. - The data is likely questionable and often underpowered. - Institutional politics. everywhere. - Marketing ("Curing Cancer"). The role is actually just juggling various bioinformatics file formats.
> just juggling various bioinformatics file formats Your other points are spot on. This one I want to address specifically. The file formats. Academics love their incredibly over-engineered file formats. MARC. SGML. DICOM. HL7. RDF. Those are just the ones I know. Universally, they try to cover every corner case that anyone could ever imagine. Academics absolutely love their ontologies. Just implementing one of them…
DICOM is for radiology.
RDF and SGML, well, they're from the same era as XML, so yeah.
Re: Consider working on genomics
#10920 years ago I got interested in "bioinformatics." I loved learning something about molecular biology, after all those years of hearing about DNA and not understanding it. And "Molecular Biology of the Cell" is, hands down, the greatest textbook ever written. That said: a lot of the comments are spot on. You're working in a field where the hard scientists and business people rule and you're a helper. Maybe they're gr…
>Molecular Biology of the Cell Tangential, but what are the chemistry prereqs to grasp this book?
Re: Consider working on genomics
#110Academia? Yeah they're going to be one of the last to realize, PIs don't want to cede any power in their little fiefdom. Very familiar with the dynamics there.