Earlier quoted context omitted.
It is unfortunate that the authors of this paper didn't reach out to experts in each programming language in order to write high-quality code against which they could have run the analysis. This seems like the perfect use-case for open-source: academic study, subject-matter experts in one area who are stepping outside their areas of expertise and an interesting subject matter. They should have crowd-sourced the code…
I don't know about other languages, but the authors did reach out to us to sort out performance issues with the Julia code.
I was really impressed with the speed difference they noted between Python and R and the fact that Numba wasn't too much slower than C++ implementations. However, given the state of the R code I became wary of accepting the benchmarks at face value.
I haven't made the jump from R to Python for statistical applications yet. So, this article gave me something to think about. In terms of programmer happiness, I'm willing to live with a little slower performance in Python and not have to spend hours in C++.