Earlier quoted context omitted.
"reject just one flight plan, and allow the rest to proceed." rejecting a plan wouldn't necessarily mean it doesn't exist/take off anymore, so that doesn't sound sensible
I admit I have no idea how the system works but if there is an obligation to submit a flight plan in advance then there should also be a standard procedure not to let planes take off or enter airspace if they don't. At the very least there should indeed be a procedure to reject the flight plan even if flight cannot be stopped.
How?