This is such a frustrating clickbait headline! Most of the 'attack' s are: 1. Plain old bugs in apt. 2. Involve disabling the very security features (GPG and checksum verification) designed to prevent that attack!
I'm the author of the article. We never suggest turning off GPG and checksum verification.
The bugs may be in APT, but they allow several attack vectors against APT, as explained throughout. Let me know if you have any specific questions and I'd be happy to help clear things up!