Viewing profile — tdido

You can go a very long way just mapping your DNA reads to a reference genome [0]. This reference will have associated annotations of different types, e.g. mutations, which automati…

See here for updates: https://bsky.app/profile/matrix.org/post/3lxuslbzjuc2t

That's actually pretty much what Andrej Karpathy mentions as a mitigation for hallucinations here: https://m.youtube.com/watch?v=7xTGNNLPyMI&t=5400s

Spanish National Cancer Research Centre (CNIO) | Madrid, Spain | HYBRID (2d/week on-site) | HPC Engineer | Full-time We're looking for an HPC engineer to join us at the Bioinformat…

https://arxiv.org/abs/2301.12670

https://news.ycombinator.com/item?id=34830936

Having a 3D printer available, I've been using these two projects to set up my modest workshop and it's worked out great. https://github.com/jeffbarr/gridfinity-catalog https://git…

Very much so. As a bioinformatician, for me conda has become a central part of my workflow as a generic package manager through the conda-forge and bioconda channels. I know a few …

I sync my journal directory using syncthing and it works reasonably well.

This is used in both bwa [1] and bowtie [2], two of the most popular DNA sequence aligners. [1] https://github.com/lh3/bwa [2] https://github.com/BenLangmead/bowtie

I would easily expect even worse than that any day during peak hour in any of the larger stations here in Madrid.

It won't be perfect, but you will have a fair amount of places where it can and will be implemented. Our research centre has central A/C and they announced the change a few days ag…

Both more powerful and less glamorous than Mare Nostrum 4, which is located inside a former chapel: https://www.silicon.es/wp-content/uploads/2017/06/2017_BSC_S...

You can use "-i" for in-place password generation, which will just replace the first line.

El Diablo and Murcielago were also fighting bulls.

Not paid well at all, so compensation can't be a driver. That doesn't mean you can't find decent wages, but the average is low. If you're still interested feel free to email me and…

Certainly not because of compensantion, but I switched to academia after 10 years as a consultant by doing a PhD in bioinformatics. I now work in a cancer research centre. There is…

I use https://www.mkdocs.org/ , which is markdown-based. It's simple to get started and customizable enough if needed.

Seems like there's a conda package in the works: https://github.com/bioconda/bioconda-recipes/pull/29660

See also: https://dl.acm.org/doi/pdf/10.1145/3360551 https://www.nature.com/articles/s41587-021-00985-6 (paywalled)

Actually, for the use case of genome assemblies you can compensate for the error rate with depth of coverage. Long reads are already the state-of-the-art for assembling genomes and…

They seem to be under the FCA: https://transferwise.com/help/articles/2932699/what-is-the-f... Do you mean they don't subscribe to the 80k protection or something like that?

Ah, sorry about that. I'm not getting a paywall for whatever reason.

We're certainly already there with food related companies: https://www.businessinsider.com/10-companies-control-the-foo...