Viewing profile — kxc42

For python projects I created pytest-archon[1], initially for humans, but now I'm using it for agents, too. [1]: https://github.com/jwbargsten/pytest-archon

I just don't get the need to figure out a system that represents the true way of taking notes. Everybody is different: different in skills, needs and working styles. Some want a di…

That can be a challenge, but you can also build an "artificial" reference genome. You just use it for compression, not for any real analyses. This would allow you to still use alig…

I'm not sure why gzip still pops up for FASTQ data, as it is quite easy to bin the quality scores, align it against a reference genome and compress it as e.g. CRAM [1,2]. With 8 bi…

That answer somehow reminds me of an article in logicmag: An Interview with an Anonymous Data Scientist [1]. [1]: https://logicmag.io/intelligence/interview-with-an-anonymous...

Funny coincidence: just one week ago I and a colleague of mine started with "pytest-arch" [1], a pytest plugin to test for architectural constraints. On purpose we kept it very sim…

Difficult to say, as I did not measure anything. From the code I've written I get the "feeling" that it is more compact compared to plain lua, reducing (my) cognitive load. Fennel …

In terms of practical application, I saw (e.g. leap[1]) and enjoyed using fennel[2] for writing neovim plugins. [1]: https://github.com/ggandor/leap.nvim [2]: https://fennel-lang.o…

I was surprised that nobody mentioned the Collective Code Construction Contract of zeromq/Pieter Hintjens [1]. It tries to minimise the friction created by maintaining & contributi…

Basically you have three approaches to tackle code samples in markdown files: 1. run the code with some kind of plugin as part of your doc pipeline 2. generate documentation from y…